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Petri nets for modelling metabolic pathways: a survey
P. Baldan, N. Cocco, A. Marin, M. Simeoni
Natural Computing, Springer Netherlands, (ISSN 1567-7818)
pp. 1 - 35, February 2010
DOI 10.1007/s11047-010-9180-6


MPath2PN - Translating Metabolic Pathways into Petri Nets
P. Baldan, N. Cocco, F. De Nes, M. Llabres Segura, A. Marin, M. Simeoni
Proceedings of BioPPN 2011, CEUR WORKSHOP PROCEEDINGS, vol. 724, pp. 102-116 (ISSN 1613-0073), 2011


Comparison of Metabolic Pathways by Considering Potential Fluxes
P. Baldan, N. Cocco, M. Simeoni
Proceedings of BioPPN 2012, CEUR WORKSHOP PROCEEDINGS, vol. 852, pp. 2-17 (ISSN 1613-0073), 2012


Comparing Metabolic Pathways through Potential Fluxes: a Selectively Open Approach
P. Baldan, M. Bocci, N. Cocco, M. Simeoni
Proceedings of BioPPN 2013, CEUR WORKSHOP PROCEEDINGS, vol. 998, pp. 1-15 (ISSN 1613-0073), 2013


Comparing Metabolic Pathways through Reactions and Potential Fluxes
P. Baldan, N. Cocco, F. Giummolè, M. Simeoni
Transactions on Petri Nets and Other Models of Concurrency (ToPNoC) LNCS 8100, pp. 1-23, (ISSN 1867-7193), 2013


Representing and Comparing Metabolic Pathways as Petri Nets with MPath2PN and CoMeta
P. Baldan, N. Cocco, M. Simeoni
Proceedings of CS2BIO 2013, Electronic Notes in Theoretical Computer Science (ISSN: 1571-0661), to Appear, 2013