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Computational pipeline to probe NaV1.7 gain-of-function variants in neuropathic painful syndromes
Toffano, Alberto A.; Chiarot, Giacomo; Zamuner, Stefano; Marchi, Margherita; Salvi, Erika; Waxman, Stephen G.; Faber, Catharina G.; Lauria, Giuseppe; Giacometti, Achille; Simeoni, Marta
SCIENTIFIC REPORTS, vol. 10, 2020


A Petri net modeling approach to explore the temporal dynamics of the provision of multiple ecosystem services
Rova S.; Meire P.; Muller F.; Simeoni M.; Pranovi F.
SCIENCE OF THE TOTAL ENVIRONMENT, Elsevier B.V., vol. 655, pp. 1047-1061, 2019


Petri Nets for Modelling and Analysing Trophic Networks
Baldan Paolo, Bocci Martina, Brigolin Daniele, Cocco Nicoletta, Monika Heiner, Marta Simeoni
FUNDAMENTA INFORMATICAE, vol. 160, pp. 27-52, 2018


Petri nets for modelling and analysing trophic networks
Proceedings of Biological Processes & Petri Nets 2015, BioPPN15, CEUR-WS.org, vol. 1373, pp. 21-36, 2015


MP-Align: Alignment of Metabolic Pathways
Ricardo Alberich; Mercè Llabrés; David Sánchez; Marta Simeoni; Marc Tuduri
BMC SYSTEMS BIOLOGY, vol. 8, pp. 1-16, 2014


Comparing Metabolic Pathways through Reactions and Potential Fluxes
P. Baldan, N. Cocco, F. Giummolè, M. Simeoni
Transactions on Petri Nets and Other Models of Concurrency (ToPNoC) LNCS 8100, pp. 1-23, (ISSN 1867-7193), 2013


Representing and Comparing Metabolic Pathways as Petri Nets with MPath2PN and CoMeta
P. Baldan, N. Cocco, M. Simeoni
Proceedings of the Fourth International Workshop on Interactions Between Computer Science and Biology (CS2Bio'13), Elsevier, vol. 299, pp. 5-13, 2013


Comparison of Metabolic Pathways by Considering Potential Fluxes
P. Baldan, N. Cocco, M. Simeoni
Proceedings of BioPPN 2012, CEUR WORKSHOP PROCEEDINGS, vol. 852, pp. 2-17, 2012


MPath2PN - Translating Metabolic Pathways into Petri Nets
P. Baldan, N. Cocco, F. De Nes, M. Llabres Segura, A. Marin, M. Simeoni
Proceedings of BioPPN 2011, CEUR WORKSHOP PROCEEDINGS, vol. 724, pp. 102-116 (ISSN 1613-0073), 2011


Petri nets for modelling metabolic pathways: a survey
P. Baldan, N. Cocco, A. Marin, M. Simeoni
Natural Computing, Springer Netherlands, (ISSN 1567-7818)
pp. 1 - 35, February 2010